All functions

l4

PCRedux - quantitative PCR Data Mining and Machine Learning Toolkit

data_sample RAS002 RAS002_decisions

The datasets implemented in PCRedux

autocorrelation_test()

A function to test for autocorrelation of amplification curve data from a quantitative PCR experiment

decision_modus()

A function to get a decision (modus) from a vector of classes

earlyreg()

A function to calculate the slope and intercept of an amplification curve data from a quantitative PCR experiment.

encu()

A function to calculate numerous features from amplification curve data from a quantitative PCR experiment.

head2tailratio()

A function to calculate to head to tail ratio of amplification curve data from a quantitative PCR experiment

hookreg()

A function to calculate the slope and intercept of an amplification curve data from a quantitative PCR experiment at the end of the data stream.

hookregNL()

hookregNL - A function to calculate the slope of amplification curves in the tail region

mblrr()

A function to perform a Qunantile-filter based Local Robust Regression

pcrfit_single()

pcrfit_single - A function to extract features from an amplification curve

performeR()

Performance analysis for binary classification

qPCR2fdata()

A helper function to convert amplification curve data to the fdata format.

run_PCRedux()

PCRedux app

tReem()

A function to Group Amplification Curves According to their Shape

winklR()

winklR: A function to calculate the angle based on the first and the second derivative of an amplification curve data from a quantitative PCR experiment.