All functions
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l4
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PCRedux - quantitative PCR Data Mining and Machine Learning Toolkit |
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data_sample RAS002 RAS002_decisions
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The datasets implemented in PCRedux |
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autocorrelation_test()
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A function to test for autocorrelation of amplification curve data
from a quantitative PCR experiment |
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decision_modus()
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A function to get a decision (modus) from a vector of classes |
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earlyreg()
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A function to calculate the slope and intercept of an amplification curve data
from a quantitative PCR experiment. |
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encu()
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A function to calculate numerous features from amplification curve data
from a quantitative PCR experiment. |
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head2tailratio()
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A function to calculate to head to tail ratio of amplification curve data
from a quantitative PCR experiment |
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hookreg()
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A function to calculate the slope and intercept of an amplification curve data
from a quantitative PCR experiment at the end of the data stream. |
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hookregNL()
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hookregNL - A function to calculate the slope of amplification curves in the tail region |
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mblrr()
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A function to perform a Qunantile-filter based Local Robust Regression |
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pcrfit_single()
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pcrfit_single - A function to extract features from an amplification curve |
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performeR()
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Performance analysis for binary classification |
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qPCR2fdata()
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A helper function to convert amplification curve data to the fdata format. |
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run_PCRedux()
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PCRedux app |
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tReem()
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A function to Group Amplification Curves According to their Shape |
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winklR()
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winklR: A function to calculate the angle based on the first and the second
derivative of an amplification curve data from a quantitative PCR experiment. |